-------------------------------------------------------------------------------
The complete contents of the MEME/MAST tarfile is listed below.
Following the directory listing, the names of the files which are
included in the licenses for MEME and MAST are specified.  All other
files are provided for informational and/or debugging
purposes only and are not part of the license.
-------------------------------------------------------------------------------

-------------------------------------------------------------------------------
BEGIN TARFILE DIRECTORY LISTING
-------------------------------------------------------------------------------

meme.3.0.com/
COPYRIGHT	README

meme.3.0.com/bin:
2html.pl         machid         mast2html        organize
make_logodds     runtests 	install          meme2html

meme.3.0.com/doc:
bkg.jpg                   mast-output-example.html  meme-output-example.html
mast-output.html          meme.html
intro.html                mast.html                 motif-format.html
mast-databases.html       meme-explanation.html     papers.html
mast-input.html           meme-input.html           release_notes.html
mast-intro.html           meme-intro.html

meme.3.0.com/doc/help:
help_alphabet.html      help_distribution.html  help_format.html

meme.3.0.com/src:
general.csh      makefile         oops.c
background.c     getsize.c        mast-util.c      prior.c
banner.c         hash.c           mast.c           prior1.plib
clock.c          hash_alph.c      mast.csh         prior30.plib
diagram.c        init.c           meme.c           read_seq_file.c
diagram.y        io.c             meme.csh         regress.c
discretize.c     justlike.c       meme.doc         seq2theta.c
display.c        likelihood.c     meme_util.c      star.c
dpalign.c        llr.c            message.c        starts.c
em.c             logodds.c        motifs.c         subseq7.c
gamma.c          logs.c           mp.c             tcm.c

meme.3.0.com/src/INCLUDE:
background.h     general.h        macros.h         read_seq_file.h
banner.h         hash.h           mast.h           regress.h
chi.h            hash_alph.h      meme.h           shuffle_int.h
clock.h          histogram.h      message.h        split.h
diagram.h        ic.h             motifs.h         star.h
display.h        io.h             mp.h             user.h
dpalign.h        llr.h            mtype.h
em.h             logodds.h        prior.h
gamma.h          logs.h           projrel.h

meme.3.0.com/tests:
NO_up800.s                         meme.INO_up800.oops.html
adh.s                               meme.INO_up800.tcm.html
crp0.s                              meme.INO_up800.zoops.html
farntrans5.s                        meme.adh.oops.html
lex0.s                              meme.adh.tcm.html
lipocalin.s                         meme.adh.zoops.html
mast.INO_up800.oops.html            meme.crp0.oops.html
mast.INO_up800.tcm.html             meme.crp0.tcm.html
mast.INO_up800.zoops.html           meme.crp0.zoops.html
mast.adh.oops.html                  meme.farntrans5.oops.html
mast.adh.oops.mini-drosoph.s.html   meme.farntrans5.tcm.html
mast.adh.tcm.html                   meme.farntrans5.zoops.html
mast.adh.tcm.mini-drosoph.s.html    meme.lipocalin.oops.html
mast.adh.zoops.html                 meme.lipocalin.tcm.html
mast.adh.zoops.mini-drosoph.s.html  meme.lipocalin.zoops.html
mast.crp0.oops.html                 mini-drosoph.s
mast.crp0.tcm.html                  noq.s
mast.crp0.zoops.html                nr.freq
mast.farntrans5.oops.html           nt.freq
mast.farntrans5.tcm.html            uprot.freq
mast.farntrans5.zoops.html          yeast.nc.1.freq
mast.lipocalin.oops.html            yeast.nc.3.freq
mast.lipocalin.tcm.html             yeast.nc.6.freq
mast.lipocalin.zoops.html
-------------------------------------------------------------------------------
END TARFILE DIRECTORY LISTING
-------------------------------------------------------------------------------


-------------------------------------------------------------------------------
Included in MEME license:

meme.3.0.com/src:
general.csh      makefile         oops.c
background.c     prior.c
banner.c         hash.c           prior1.plib
clock.c          hash_alph.c      prior30.plib
diagram.c        init.c           meme.c           read_seq_file.c
io.c             meme.csh         regress.c
discretize.c     justlike.c       meme.doc         seq2theta.c
display.c        likelihood.c     meme_util.c      star.c
dpalign.c        llr.c            message.c        starts.c
em.c             logodds.c        motifs.c         subseq7.c
gamma.c          logs.c           mp.c             tcm.c

meme.3.0.com/src/INCLUDE:
background.h     general.h        macros.h         read_seq_file.h
banner.h         hash.h           regress.h
chi.h            hash_alph.h      meme.h
clock.h          message.h        split.h
ic.h             motifs.h         star.h
display.h        io.h             mp.h             user.h
dpalign.h        llr.h            mtype.h
em.h             logodds.h        prior.h
gamma.h          logs.h           projrel.h
-------------------------------------------------------------------------------

-------------------------------------------------------------------------------
Included in MAST license:

meme.3.0.com/bin:
make_logodds mast2html

meme.3.0.com/src:
diagram.c	diagram.y	logodds.c	mast.c		mast.csh
mast-util.c 	motifs.c	regress.c

meme.3.0.com/src/INCLUDE:
diagram.h 	display.h	 logodds.h 	mast.h 		motifs.h
regress.h
-------------------------------------------------------------------------------

-------------------------------------------------------------------------------
Included in both MEME and MAST licenses:

meme.3.0.com:
COPYRIGHT	README

meme.3.0.com/bin:
install 	machid 	

meme.3.0.com/src:
clock.c		hash.c		hash_alph.c	makefile	read_seq_file.c
getsize.c	general.csh	

meme.3.0.com/src/INCLUDE:
clock.h 	general.h 	hash.h 		hash_alph.h 	histogram.h
macros.h 	mtype.h 	projrel.h 	read_seq_file.h user.h
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