Version 4.9.0

Use this form to submit motifs to FIMO to be used in searching a sequence database.

Data Submission Form

Required

Your e-mail address: Re-enter e-mail address: Your motif file: Sample DNA minimal motif format file.

Sequence database to search--select one of the following: A supported database: Category: Non-redundant and Special Databases Other Genomes ENSEMBL Genomes ENSEMBL Ab Initio Predicted Proteins GENBANK Fungi Genomes GENBANK Bacteria Genomes Upstream Sequences Database: or Your FASTA sequence file (1000000 sequence characters maximum): Clear Sample DNA database.

Optional

Description of your motifs:

p-value output theshold 1 0.1 0.01 0.001 1e-4 1e-5 1e-6 1e-7 1e-8 1e-9 Scan given strand only

     

FIMO Custom Tracks For the UCSC Genome Browser

The links below display custom tracks for FIMO in the UCSC Genome Browser. The tracks display statistically significant matches between the human genome and motifs from the JASPAR CORE 2009 and TRANSFAC 10.2 motif databases. The quality of each match is summarized as a q-value, defined as the minimal false discovery rate threshold at which the match would be deemed significant. Only matches with a q-value ≤ 0.1 are shown.

• JASPAR hg18, hg19
• TRANSFAC hg18, hg19