Sequence databases available for search
The sequence databases that can be searched are grouped into 2 categories:
Single Species
Danio rerio (Zebrafish)
1000 bps upstream - 200 bps downstream (-1000 to 199) for Danio rerio.
(nucleotide only)
Drosophila Melanogaster (Fruit fly)
1000 bps upstream - 200 bps downstream (-1000 to 199) for Drosophila melanogaster.
(nucleotide only)
Gallus Gallus (Chicken)
2000 bps upstream (-2000 to 0) for Gallus Gallus.
(nucleotide only)
Rattus norvegicus (Rat)
1000 bps upstream - 200 bps downstream (-1000 to 199) for Rattus norvegicus.
(nucleotide only)
Schizosaccharomyces pombe
1000 bps upstream - 200 bps downstream (-1000 to 199) for S.pombe.
(nucleotide only)
Multiple Species
E.coli K12
1000 bps upstream of the first gene in the operon 200 bps downstream (-1000 to 199) for E.coli K12
(nucleotide only)
Comparative database(s):
- E.coli CTF073
- Salmonella enterica serovar Typhi Ty2
- Yersinia pestis CO92
Homo sapiens (Human)
1000 bps upstream - 200 bps downstream (-1000 to 199) for Homo sapiens.
(nucleotide only)
Comparative database(s):
- Mus musculus (Mouse)
- Canis familiaris (Dog)
- Equus caballus (Horse)
Mus musculus (Mouse)
1000 bps upstream - 200 bps downstream (-1000 to 199) for Mus musculus.
(nucleotide only)
Comparative database(s):
- Canis familiaris (Dog)
- Rattus Norvegicus (Rat)
- Equus caballus (Horse)
- Homo sapiens (Human)
Saccharomyces cerevisiae (yeast)
1000 bps upstream - 200 bps downstream (-1000 to 199) for S.cerevisiae.
(nucleotide only)
Comparative database(s):
- S. bayanus
- S. mikatae
- S. paradoxus