Jaspar transforms a directory of JASPAR files into a MEME version 4 patterned file fir for use with MEME Suite programs.
Input: a directory having one or more JASPAR motif files. The possible patterns are:
A probability matrix and selectivelly a log-odds matrix is output for each motif file. The probability matrix is computed pseudo-counts containing of the background frequency (see -bg, below) multiplied by the total pseudocounts (see -pseudo, below).